track JH-7
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel JH-7 thoc5-het total
longLabel JH-7 thoc5-het, ov, totalRNA, 50nt-dir, RPM
configurable on
autoScale on
type bigWig

        track JH7-thoc5-het-ov-totalRNA-plusStrand
        parent JH-7
        type bigWig
        bigDataUrl http://jhlinux1.duckdns.org/JH7_Thoc5_het_ov_rRNA_dep.rRNAun.dm3.v0.m1.s.NH.bam.rpm.plus.bigWig
        color 128,0,0

        track JH7-thoc5-het-ov-totalRNA-minusStrand
        parent JH-7
        type bigWig
        bigDataUrl http://jhlinux1.duckdns.org/JH7_Thoc5_het_ov_rRNA_dep.rRNAun.dm3.v0.m1.s.NH.bam.rpm.minus.bigWig
        color 128,0,0

track JH-8
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel JH-8 thoc5-mut total
longLabel JH-8 thoc5-mut, ov, totalRNA, 50nt-dir, RPM
configurable on
autoScale on
type bigWig

        track JH8-thoc5-mut-ov-totalRNA-plusStrand
        parent JH-8
        type bigWig
        bigDataUrl http://jhlinux1.duckdns.org/JH8_Thoc5_mut_ov_rRNA_dep.rRNAun.dm3.v0.m1.s.NH.bam.rpm.plus.bigWig
        color 128,0,0

        track JH8-thoc5-mut-ov-totalRNA-minusStrand
        parent JH-8
        type bigWig
        bigDataUrl http://jhlinux1.duckdns.org/JH8_Thoc5_mut_ov_rRNA_dep.rRNAun.dm3.v0.m1.s.NH.bam.rpm.minus.bigWig
        color 128,0,0

track ESJH-1
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-1 thoc5-mut chr
longLabel ESJH-1 thoc5-mut, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH1-thoc5-mut-ov-chrRNA-plusStrand
	parent ESJH-1
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_1_chrom_thoc5.sorted.bam.rpm.plus.bigWig
	color 0,128,0

	track ESJH1-thoc5-mut-ov-chrRNA-minusStrand
	parent ESJH-1
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_1_chrom_thoc5.sorted.bam.rpm.minus.bigWig
	color 0,128,0

track ESJH-1-mul
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-1-mul thoc5-mut chr
longLabel ESJH-1, m10000, thoc5-mut, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH1-mul-thoc5-mut-ov-chrRNA-plusStrand
	parent ESJH-1-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH01_chrom_thoc5.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.plus.bigWig
	color 0,128,0

	track ESJH1-mul-thoc5-mut-ov-chrRNA-minusStrand
	parent ESJH-1-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH01_chrom_thoc5.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.minus.bigWig
	color 0,128,0



track ESJH-2
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-2 thoc5-het chr
longLabel ESJH-2 thoc5-het, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH2-thoc5-het-ov-chrRNA-plusStrand
	parent ESJH-2
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_2_chrom_thoc5-het.sorted.bam.rpm.plus.bigWig
	color 0,128,0

	track ESJH2-thoc5-het-ov-chrRNA-minusStrand
	parent ESJH-2
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_2_chrom_thoc5-het.sorted.bam.rpm.minus.bigWig
	color 0,128,0




track ESJH-2-mul
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-2-mul thoc5-het chr
longLabel ESJH-2, m10000, thoc5-het, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH2-mul-thoc5-het-ov-chrRNA-plusStrand
	parent ESJH-2-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH02_chrom_thoc5-het.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.plus.bigWig
	color 0,128,0

	track ESJH2-mul-thoc5-het-ov-chrRNA-minusStrand
	parent ESJH-2-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH02_chrom_thoc5-het.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.minus.bigWig
	color 0,128,0



track ESJH-6
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-6 sh-W chr
longLabel ESJH-6 sh-W, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH6-sh-W-ov-chrRNA-plusStrand
	parent ESJH-6
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_6_chrom_shW-short.sorted.bam.rpm.plus.bigWig
	color 0,128,128

	track ESJH6-sh-W-ov-chrRNA-minusStrand
	parent ESJH-6
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_6_chrom_shW-short.sorted.bam.rpm.minus.bigWig
	color 0,128,128

track ESJH-6-mul
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-6-mul sh-W chr
longLabel ESJH-6, m10000, sh-W, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH6-mul-sh-W-ov-chrRNA-plusStrand
	parent ESJH-6-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH06_chrom_shW-short.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.plus.bigWig
	color 0,128,128

	track ESJH6-mul-sh-W-ov-chrRNA-minusStrand
	parent ESJH-6-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH06_chrom_shW-short.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.minus.bigWig
	color 0,128,128


track ESJH-4
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-4 sh-Cuff chr
longLabel ESJH-4 sh-Cuff, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH4-sh-Cuff-ov-chrRNA-plusStrand
	parent ESJH-4
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_4_chrom_shCuff.sorted.bam.rpm.plus.bigWig
	color 0,128,128

	track ESJH4-sh-Cuff-ov-chrRNA-minusStrand
	parent ESJH-4
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH_4_chrom_shCuff.sorted.bam.rpm.minus.bigWig
	color 0,128,128


track ESJH-4-mul
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel ESJH-4-mul sh-Cuff chr
longLabel ESJH-4, m10000, sh-Cuff, ov, chr-RNA, 100nt-dir, RPM
configurable on
autoScale on
type bigWig

	track ESJH4-mul-sh-Cuff-ov-chrRNA-plusStrand
	parent ESJH-4-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH04_chrom_shCuff.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.plus.bigWig
	color 0,128,128

	track ESJH4-mul-sh-Cuff-ov-chrRNA-minusStrand
	parent ESJH-4-mul
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/ESJH04_chrom_shCuff.rRNAun.dm3.v0.m10000.s.NH.bam.rpm.minus.bigWig
	color 0,128,128


track JH-3-piRNA
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel JH-3 thoc5-mut piRNA
longLabel JH-3 thoc5-mut, ov, longer than 26 nt, norm to miRNAs
configurable on
autoScale on
type bigWig

	track JH-3-thoc5-mut-piRNA-plusStrand
	parent JH-3-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/JH3_index6_thoc5_ovary_long.rRNAun.dm3.v0.m1.s.NH.bam.plus.bigWig
	color 128,128,0

	track JH-3-thoc5-mut-piRNA-minusStrand
	parent JH-3-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/JH3_index6_thoc5_ovary_long.rRNAun.dm3.v0.m1.s.NH.bam.minus.new.bigWig
	color 128,128,0

track JH-1-piRNA
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel JH-1 thoc5-het piRNA
longLabel JH-1 thoc5-het, ov, longer than 26 nt, norm to miRNAs
configurable on
autoScale on
type bigWig

	track JH-1-thoc5-het-piRNA-plusStrand
	parent JH-1-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/JH1_index4_het_ovary_long.rRNAun.dm3.v0.m1.s.NH.bam.plus.bigWig
	color 128,128,0

	track JH-1-thoc5-het-piRNA-minusStrand
	parent JH-1-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/JH1_index4_het_ovary_long.rRNAun.dm3.v0.m1.s.NH.bam.minus.new.bigWig
	color 128,128,0


track Brennecke2014-control-piRNA
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel Brennecke2014 control piRNA
longLabel Brennecke2014 control, ov, longer than 26 nt, norm to miRNAs
configurable on
autoScale on
type bigWig

	track Brennecke2014-control-piRNA-plusStrand
	parent Brennecke2014-control-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/Brennecke2014_Control_SRR1187947_long.rRNAun.dm3.v0.m1.s.NH.bam.plus.bigWig
	color 128,0,128

	track Brennecke2014-control-piRNA-minusStrand
	parent Brennecke2014-control-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/Brennecke2014_Control_SRR1187947_long.rRNAun.dm3.v0.m1.s.NH.bam.minus.new.bigWig
	color 128,0,128

track Brennecke2014-rhi-mut-piRNA
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel Brennecke2014 rhi-mut piRNA
longLabel Brennecke2014 rhi-mut, ov, longer than 26 nt, norm to miRNAs
configurable on
autoScale on
type bigWig

	track Brennecke2014-rhi-mut-piRNA-plusStrand
	parent Brennecke2014-rhi-mut-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/Brennecke2014_Rhino_Mutant_SRR1187948_long.rRNAun.dm3.v0.m1.s.NH.bam.plus.bigWig
	color 128,0,128

	track Brennecke2014-rhi-mut-piRNA-minusStrand
	parent Brennecke2014-rhi-mut-piRNA
	type bigWig
	bigDataUrl http://jhlinux1.duckdns.org/Brennecke2014_Rhino_Mutant_SRR1187948_long.rRNAun.dm3.v0.m1.s.NH.bam.minus.new.bigWig
	color 128,0,128